Clinical decision-making is a fundamental stage in delivering appropriate care to patients. In recent years several decision-making systems designed to aid the clinician in this process have been developed. However, technical solutions currently in use are based on simple regression models and are only able to take into account simple pre-defined multiple-choice features, such as patient age, pre-existing conditions, smoker status, etc. One particular source of patient data, that available decision-making systems are incapable of processing is the collection of patient consultation GP notes. These contain crucial signs and symptoms - the information used by clinicians in order to make a final decision and direct the patient to the appropriate care. Extracting information from GP notes is a technically challenging problem, as they tend to include abbreviations, typos, and incomplete sentences. This paper addresses this open challenge. We present a framework that performs knowledge graph construction from raw GP medical notes written during or after patient consultations. By relying on support phrases mined from the SNOMED ontology, as well as predefined supported facts from values used in the RECAP (REmote COVID-19 Assessment in Primary Care) patient risk prediction tool, our graph generative framework is able to extract structured knowledge graphs from the highly unstructured and inconsistent format that consultation notes are written in. Our knowledge graphs include information about existing patient symptoms, their duration, and their severity. We apply our framework to consultation notes of COVID-19 patients in the UK COVID-19 Clinical Assesment Servcie (CCAS) patient dataset. We provide a quantitative evaluation of the performance of our framework, demonstrating that our approach has better accuracy than traditional NLP methods when answering questions about patients.

The amount of data for processing and categorization grows at an ever increasing rate. At the same time the demand for collaboration and transparency in organizations, government and businesses, drives the release of data from internal repositories to the public or 3rd party domain. This in turn increase the potential of sharing sensitive information. The leak of sensitive information can potentially be very costly, both financially for organizations, but also for individuals. In this work we address the important problem of sensitive information detection. Specially we focus on detection in unstructured text documents. We show that simplistic, brittle rule sets for detecting sensitive information only find a small fraction of the actual sensitive information. Furthermore we show that previous state-of-the-art approaches have been implicitly tailored to such simplistic scenarios and thus fail to detect actual sensitive content. We develop a novel family of sensitive information detection approaches which only assumes access to labeled examples, rather than unrealistic assumptions such as access to a set of generating rules or descriptive topical seed words. Our approaches are inspired by the current state-of-the-art for paraphrase detection and we adapt deep learning approaches over recursive neural networks to the problem of sensitive information detection. We show that our context-based approaches significantly outperforms the family of previous state-of-the-art approaches for sensitive information detection, so-called keyword-based approaches, on real-world data and with human labeled examples of sensitive and non-sensitive documents.